Depending on you budget, I'd replace the counter tops and flooring. I agree with removing the dark valances. Replace the top corner cabinets with 42" cabinets or remove entirely. The ones there are too small for the space. An island, not that you need the counter space would cozy up the area. Also replace the front on the dishwasher with stainless steel to match other appliances. Your layout is good, no changes there! If you decide on an island, you could include stools there and remove the current peninsula, this would open the area to what ever room is adjoining the space. Good luck and have fun. It is a really nice space.

I would consider something light with some other colors to mix in like this. http://t.homedepot.com/p/Silestone-2-in-Quartz-Countertop-Sample-in-Mont-Blanc-SS-Q0220/203674451/ I like the wood paneling and would paint it a white with a warm feel to it. A white will reflect a lot of light from your large window. I wouldn't paint the window casing as it might tie in better with the rest of the house. Good luck!!

One option is to have a darker countertop or flooring to provide some contrast and warmth.

We currently have a deck on the first floor over the garage. It construction is wood with a water proof membrane over, that is now leaking, with carpet that is used on boats over the top. What would be the lightest and best floor covering to use when we re do the deck?